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Category Order could not understand your category HTML. Please do the following:

Disable all plugins except for category order to see if some other plugin is causing the problem. If the problem goes away, re-enable each plugin until you find the incompatible one.
Try switching to a different theme, like the WordPress default theme.

Once you have tried the above steps, email david@coppit.org with the results of these debugging steps. Also include the following information:

Original HTML:
<li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/TravellingJosh/category/india" >India</a> (2)
</li>
<li class="cat-item cat-item-963"><a href="https://blogs.bootsnall.com/TravellingJosh/category/japan" >Japan</a> (1)
</li>
<li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/TravellingJosh/category/thailand" >Thailand</a> (3)
</li>
<li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/TravellingJosh/category/travel" >Travel</a> (15)
</li>

Processed HTML:
<li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/TravellingJosh/category/india" >India</a> (2)
</li>
<li class="cat-item cat-item-963"><a href="https://blogs.bootsnall.com/TravellingJosh/category/japan" >Japan</a> (1)
</li>
<li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/TravellingJosh/category/thailand" >Thailand</a> (3)
</li>
<li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/TravellingJosh/category/travel" >Travel</a> (15)
</li>

Category pattern:
/http\:\/\/blogs\.bootsnall\.com\/TravellingJosh.*?\/category\/(?:[^\/"]+\/)*([^\/"]+)/

Items:
Array
(
    [0] => <li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/TravellingJosh/category/india" >India</a> (2) </li>
    [1] => <li class="cat-item cat-item-963"><a href="https://blogs.bootsnall.com/TravellingJosh/category/japan" >Japan</a> (1) </li>
    [2] => <li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/TravellingJosh/category/thailand" >Thailand</a> (3) </li>
    [3] => <li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/TravellingJosh/category/travel" >Travel</a> (15) </li>
)

India (2)

Japan (1)

Thailand (3)

Travel (15)