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Category Order could not understand your category HTML. Please do the following:

Disable all plugins except for category order to see if some other plugin is causing the problem. If the problem goes away, re-enable each plugin until you find the incompatible one.
Try switching to a different theme, like the WordPress default theme.

Once you have tried the above steps, email david@coppit.org with the results of these debugging steps. Also include the following information:

Original HTML:
<li class="cat-item cat-item-221"><a href="https://blogs.bootsnall.com/bear/category/about-me" >About Me</a> (1)
</li>
<li class="cat-item cat-item-209"><a href="https://blogs.bootsnall.com/bear/category/afghanistan" >Afghanistan</a> (7)
</li>
<li class="cat-item cat-item-3138"><a href="https://blogs.bootsnall.com/bear/category/bhutan" >Bhutan!</a> (1)
</li>
<li class="cat-item cat-item-13609"><a href="https://blogs.bootsnall.com/bear/category/burnt-stuff" >Burnt stuff</a> (4)
</li>
<li class="cat-item cat-item-279"><a href="https://blogs.bootsnall.com/bear/category/china" >China</a> (3)
</li>
<li class="cat-item cat-item-2175"><a href="https://blogs.bootsnall.com/bear/category/indonesia" >Indonesia</a> (2)
</li>
<li class="cat-item cat-item-2316"><a href="https://blogs.bootsnall.com/bear/category/laos" >Laos</a> (1)
</li>
<li class="cat-item cat-item-13610"><a href="https://blogs.bootsnall.com/bear/category/my-india" >My India</a> (7)
</li>
<li class="cat-item cat-item-2179"><a href="https://blogs.bootsnall.com/bear/category/nepal" >Nepal</a> (5)
</li>
<li class="cat-item cat-item-13608"><a href="https://blogs.bootsnall.com/bear/category/nepal-trekking" >Nepal (trekking)</a> (4)
</li>
<li class="cat-item cat-item-3423"><a href="https://blogs.bootsnall.com/bear/category/pakistan" >Pakistan</a> (3)
</li>
<li class="cat-item cat-item-921"><a href="https://blogs.bootsnall.com/bear/category/scams" >Scams</a> (4)
</li>
<li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/bear/category/thailand" >Thailand</a> (4)
</li>
<li class="cat-item cat-item-280"><a href="https://blogs.bootsnall.com/bear/category/tibet" >Tibet</a> (2)
</li>
<li class="cat-item cat-item-13607"><a href="https://blogs.bootsnall.com/bear/category/travel-accommodation-and" >Travel, accommodation and $</a> (7)
</li>

Processed HTML:
<li class="cat-item cat-item-221"><a href="https://blogs.bootsnall.com/bear/category/about-me" >About Me</a> (1)
</li>
<li class="cat-item cat-item-209"><a href="https://blogs.bootsnall.com/bear/category/afghanistan" >Afghanistan</a> (7)
</li>
<li class="cat-item cat-item-3138"><a href="https://blogs.bootsnall.com/bear/category/bhutan" >Bhutan!</a> (1)
</li>
<li class="cat-item cat-item-13609"><a href="https://blogs.bootsnall.com/bear/category/burnt-stuff" >Burnt stuff</a> (4)
</li>
<li class="cat-item cat-item-279"><a href="https://blogs.bootsnall.com/bear/category/china" >China</a> (3)
</li>
<li class="cat-item cat-item-2175"><a href="https://blogs.bootsnall.com/bear/category/indonesia" >Indonesia</a> (2)
</li>
<li class="cat-item cat-item-2316"><a href="https://blogs.bootsnall.com/bear/category/laos" >Laos</a> (1)
</li>
<li class="cat-item cat-item-13610"><a href="https://blogs.bootsnall.com/bear/category/my-india" >My India</a> (7)
</li>
<li class="cat-item cat-item-2179"><a href="https://blogs.bootsnall.com/bear/category/nepal" >Nepal</a> (5)
</li>
<li class="cat-item cat-item-13608"><a href="https://blogs.bootsnall.com/bear/category/nepal-trekking" >Nepal (trekking)</a> (4)
</li>
<li class="cat-item cat-item-3423"><a href="https://blogs.bootsnall.com/bear/category/pakistan" >Pakistan</a> (3)
</li>
<li class="cat-item cat-item-921"><a href="https://blogs.bootsnall.com/bear/category/scams" >Scams</a> (4)
</li>
<li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/bear/category/thailand" >Thailand</a> (4)
</li>
<li class="cat-item cat-item-280"><a href="https://blogs.bootsnall.com/bear/category/tibet" >Tibet</a> (2)
</li>
<li class="cat-item cat-item-13607"><a href="https://blogs.bootsnall.com/bear/category/travel-accommodation-and" >Travel, accommodation and $</a> (7)
</li>

Category pattern:
/http\:\/\/blogs\.bootsnall\.com\/bear.*?\/category\/(?:[^\/"]+\/)*([^\/"]+)/

Items:
Array
(
    [0] => <li class="cat-item cat-item-221"><a href="https://blogs.bootsnall.com/bear/category/about-me" >About Me</a> (1) </li>
    [1] => <li class="cat-item cat-item-209"><a href="https://blogs.bootsnall.com/bear/category/afghanistan" >Afghanistan</a> (7) </li>
    [2] => <li class="cat-item cat-item-3138"><a href="https://blogs.bootsnall.com/bear/category/bhutan" >Bhutan!</a> (1) </li>
    [3] => <li class="cat-item cat-item-13609"><a href="https://blogs.bootsnall.com/bear/category/burnt-stuff" >Burnt stuff</a> (4) </li>
    [4] => <li class="cat-item cat-item-279"><a href="https://blogs.bootsnall.com/bear/category/china" >China</a> (3) </li>
    [5] => <li class="cat-item cat-item-2175"><a href="https://blogs.bootsnall.com/bear/category/indonesia" >Indonesia</a> (2) </li>
    [6] => <li class="cat-item cat-item-2316"><a href="https://blogs.bootsnall.com/bear/category/laos" >Laos</a> (1) </li>
    [7] => <li class="cat-item cat-item-13610"><a href="https://blogs.bootsnall.com/bear/category/my-india" >My India</a> (7) </li>
    [8] => <li class="cat-item cat-item-2179"><a href="https://blogs.bootsnall.com/bear/category/nepal" >Nepal</a> (5) </li>
    [9] => <li class="cat-item cat-item-13608"><a href="https://blogs.bootsnall.com/bear/category/nepal-trekking" >Nepal (trekking)</a> (4) </li>
    [10] => <li class="cat-item cat-item-3423"><a href="https://blogs.bootsnall.com/bear/category/pakistan" >Pakistan</a> (3) </li>
    [11] => <li class="cat-item cat-item-921"><a href="https://blogs.bootsnall.com/bear/category/scams" >Scams</a> (4) </li>
    [12] => <li class="cat-item cat-item-961"><a href="https://blogs.bootsnall.com/bear/category/thailand" >Thailand</a> (4) </li>
    [13] => <li class="cat-item cat-item-280"><a href="https://blogs.bootsnall.com/bear/category/tibet" >Tibet</a> (2) </li>
    [14] => <li class="cat-item cat-item-13607"><a href="https://blogs.bootsnall.com/bear/category/travel-accommodation-and" >Travel, accommodation and $</a> (7) </li>
)