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Category Order could not understand your category HTML. Please do the following:

Disable all plugins except for category order to see if some other plugin is causing the problem. If the problem goes away, re-enable each plugin until you find the incompatible one.
Try switching to a different theme, like the WordPress default theme.

Once you have tried the above steps, email david@coppit.org with the results of these debugging steps. Also include the following information:

Original HTML:
<li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/Scott-Rains/category/1" >1</a> (5)
</li>
<li class="cat-item cat-item-1231"><a href="https://blogs.bootsnall.com/Scott-Rains/category/australia" >australia</a> (1)
</li>
<li class="cat-item cat-item-23189"><a href="https://blogs.bootsnall.com/Scott-Rains/category/disability" >disability</a> (11)
</li>
<li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/Scott-Rains/category/india" >india</a> (1)
</li>
<li class="cat-item cat-item-14675"><a href="https://blogs.bootsnall.com/Scott-Rains/category/law" >law</a> (2)
</li>
<li class="cat-item cat-item-962"><a href="https://blogs.bootsnall.com/Scott-Rains/category/new-zealand" >new zealand</a> (1)
</li>
<li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel" >Travel</a> (13)
</li>
<li class="cat-item cat-item-16992"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel-20" >travel 2.0</a> (2)
</li>
<li class="cat-item cat-item-5062"><a href="https://blogs.bootsnall.com/Scott-Rains/category/united-nations" >united nations</a> (2)
</li>

Processed HTML:
<li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/Scott-Rains/category/1" >1</a> (5)
</li>
<li class="cat-item cat-item-1231"><a href="https://blogs.bootsnall.com/Scott-Rains/category/australia" >australia</a> (1)
</li>
<li class="cat-item cat-item-23189"><a href="https://blogs.bootsnall.com/Scott-Rains/category/disability" >disability</a> (11)
</li>
<li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/Scott-Rains/category/india" >india</a> (1)
</li>
<li class="cat-item cat-item-14675"><a href="https://blogs.bootsnall.com/Scott-Rains/category/law" >law</a> (2)
</li>
<li class="cat-item cat-item-962"><a href="https://blogs.bootsnall.com/Scott-Rains/category/new-zealand" >new zealand</a> (1)
</li>
<li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel" >Travel</a> (13)
</li>
<li class="cat-item cat-item-16992"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel-20" >travel 2.0</a> (2)
</li>
<li class="cat-item cat-item-5062"><a href="https://blogs.bootsnall.com/Scott-Rains/category/united-nations" >united nations</a> (2)
</li>

Category pattern:
/http\:\/\/blogs\.bootsnall\.com\/Scott\-Rains.*?\/category\/(?:[^\/"]+\/)*([^\/"]+)/

Items:
Array
(
    [0] => <li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/Scott-Rains/category/1" >1</a> (5) </li>
    [1] => <li class="cat-item cat-item-1231"><a href="https://blogs.bootsnall.com/Scott-Rains/category/australia" >australia</a> (1) </li>
    [2] => <li class="cat-item cat-item-23189"><a href="https://blogs.bootsnall.com/Scott-Rains/category/disability" >disability</a> (11) </li>
    [3] => <li class="cat-item cat-item-1566"><a href="https://blogs.bootsnall.com/Scott-Rains/category/india" >india</a> (1) </li>
    [4] => <li class="cat-item cat-item-14675"><a href="https://blogs.bootsnall.com/Scott-Rains/category/law" >law</a> (2) </li>
    [5] => <li class="cat-item cat-item-962"><a href="https://blogs.bootsnall.com/Scott-Rains/category/new-zealand" >new zealand</a> (1) </li>
    [6] => <li class="cat-item cat-item-132"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel" >Travel</a> (13) </li>
    [7] => <li class="cat-item cat-item-16992"><a href="https://blogs.bootsnall.com/Scott-Rains/category/travel-20" >travel 2.0</a> (2) </li>
    [8] => <li class="cat-item cat-item-5062"><a href="https://blogs.bootsnall.com/Scott-Rains/category/united-nations" >united nations</a> (2) </li>
)

1 (5)

australia (1)

disability (11)

india (1)

law (2)

new zealand (1)

Travel (13)

travel 2.0 (2)

united nations (2)