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Category Order could not understand your category HTML. Please do the following:

Disable all plugins except for category order to see if some other plugin is causing the problem. If the problem goes away, re-enable each plugin until you find the incompatible one.
Try switching to a different theme, like the WordPress default theme.

Once you have tried the above steps, email david@coppit.org with the results of these debugging steps. Also include the following information:

Original HTML:
<li class="cat-item cat-item-90"><a href="https://blogs.bootsnall.com/MNTim/category/europe" >Europe</a> (43)
</li>
<li class="cat-item cat-item-23777"><a href="https://blogs.bootsnall.com/MNTim/category/germany-2010" >Germany 2010</a> (1)
</li>
<li class="cat-item cat-item-7182"><a href="https://blogs.bootsnall.com/MNTim/category/home-and-chicago" >Home and Chicago</a> (3)
</li>
<li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/MNTim/category/1" >Jake</a> (3)
</li>
<li class="cat-item cat-item-18985"><a href="https://blogs.bootsnall.com/MNTim/category/obama-inaugural-parade" >Obama Inaugural Parade</a> (16)
</li>
<li class="cat-item cat-item-2177"><a href="https://blogs.bootsnall.com/MNTim/category/pretrip" >Pre-Trip</a> (16)
</li>
<li class="cat-item cat-item-17442"><a href="https://blogs.bootsnall.com/MNTim/category/superior-hiking-trail-thru-hike" title="Tim's Thru-Hike of the Superior Hiking Trail (204.3 miles) -- In Minnesota, on the North Shore of Lake Superior. I started at the northern terminus of the trail near Canada and ended at the current southern terminus near Two Harbors, MN.">Superior Hiking Trail Thru-Hike</a> (2)
</li>
<li class="cat-item cat-item-7181"><a href="https://blogs.bootsnall.com/MNTim/category/us-segment-1" >U.S. Segment 1</a> (22)
</li>

Processed HTML:
<li class="cat-item cat-item-90"><a href="https://blogs.bootsnall.com/MNTim/category/europe" >Europe</a> (43)
</li>
<li class="cat-item cat-item-23777"><a href="https://blogs.bootsnall.com/MNTim/category/germany-2010" >Germany 2010</a> (1)
</li>
<li class="cat-item cat-item-7182"><a href="https://blogs.bootsnall.com/MNTim/category/home-and-chicago" >Home and Chicago</a> (3)
</li>
<li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/MNTim/category/1" >Jake</a> (3)
</li>
<li class="cat-item cat-item-18985"><a href="https://blogs.bootsnall.com/MNTim/category/obama-inaugural-parade" >Obama Inaugural Parade</a> (16)
</li>
<li class="cat-item cat-item-2177"><a href="https://blogs.bootsnall.com/MNTim/category/pretrip" >Pre-Trip</a> (16)
</li>
<li class="cat-item cat-item-17442"><a href="https://blogs.bootsnall.com/MNTim/category/superior-hiking-trail-thru-hike" title="Tim's Thru-Hike of the Superior Hiking Trail (204.3 miles) -- In Minnesota, on the North Shore of Lake Superior. I started at the northern terminus of the trail near Canada and ended at the current southern terminus near Two Harbors, MN.">Superior Hiking Trail Thru-Hike</a> (2)
</li>
<li class="cat-item cat-item-7181"><a href="https://blogs.bootsnall.com/MNTim/category/us-segment-1" >U.S. Segment 1</a> (22)
</li>

Category pattern:
/http\:\/\/blogs\.bootsnall\.com\/MNTim.*?\/category\/(?:[^\/"]+\/)*([^\/"]+)/

Items:
Array
(
    [0] => <li class="cat-item cat-item-90"><a href="https://blogs.bootsnall.com/MNTim/category/europe" >Europe</a> (43) </li>
    [1] => <li class="cat-item cat-item-23777"><a href="https://blogs.bootsnall.com/MNTim/category/germany-2010" >Germany 2010</a> (1) </li>
    [2] => <li class="cat-item cat-item-7182"><a href="https://blogs.bootsnall.com/MNTim/category/home-and-chicago" >Home and Chicago</a> (3) </li>
    [3] => <li class="cat-item cat-item-1"><a href="https://blogs.bootsnall.com/MNTim/category/1" >Jake</a> (3) </li>
    [4] => <li class="cat-item cat-item-18985"><a href="https://blogs.bootsnall.com/MNTim/category/obama-inaugural-parade" >Obama Inaugural Parade</a> (16) </li>
    [5] => <li class="cat-item cat-item-2177"><a href="https://blogs.bootsnall.com/MNTim/category/pretrip" >Pre-Trip</a> (16) </li>
    [6] => <li class="cat-item cat-item-17442"><a href="https://blogs.bootsnall.com/MNTim/category/superior-hiking-trail-thru-hike" title="Tim's Thru-Hike of the Superior Hiking Trail (204.3 miles) -- In Minnesota, on the North Shore of Lake Superior.  I started at the northern terminus of the trail near Canada and ended at the current southern terminus near Two Harbors, MN.">Superior Hiking Trail Thru-Hike</a> (2) </li>
    [7] => <li class="cat-item cat-item-7181"><a href="https://blogs.bootsnall.com/MNTim/category/us-segment-1" >U.S. Segment 1</a> (22) </li>
)

Europe (43)

Germany 2010 (1)

Home and Chicago (3)

Jake (3)

Obama Inaugural Parade (16)

Pre-Trip (16)

Superior Hiking Trail Thru-Hike (2)

U.S. Segment 1 (22)